Publications

Publications

Our founders are actively contributing their research on various microbiota. To further assist you we have provided a short list of recent publications under both of their authorship, as well as the latest 20 publications in the field. Click on the headers to expand each section. 

Deng, W, Marshall, NC, Rowland, JL, McCoy, JM, Worrall, LJ, Santos, AS et al.. Assembly, structure, function and regulation of type III secretion systems. Nat. Rev. Microbiol. 2017; :. doi: 10.1038/nrmicro.2017.20. PubMed PMID:28392566 .

Reynolds, LA, Redpath, SA, Yurist-Doutsch, S, Gill, N, Brown, EM, van der Heijden, J et al.. Enteric helminths promote Salmonella co-infection by altering the intestinal metabolome. J. Infect. Dis. 2017; :. doi: 10.1093/infdis/jix141. PubMed PMID:28368463 .

McKay, KA, Kowalec, K, Brinkman, F, Finlay, BB, Horwitz, M, Manges, AR et al.. From bugs to brains: The microbiome in neurological health. Mult Scler Relat Disord. 2017;12 :1-3. doi: 10.1016/j.msard.2016.12.007. PubMed PMID:28283098 .

Tremlett, H, Bauer, KC, Appel-Cresswell, S, Finlay, BB, Waubant, E. The gut microbiome in human neurological disease: A review. Ann. Neurol. 2017;81 (3):369-382. doi: 10.1002/ana.24901. PubMed PMID:28220542 .

Marshall, NC, Finlay, BB, Overall, CM. Sharpening Host Defenses during Infection: Proteases Cut to the Chase. Mol. Cell Proteomics. 2017;16 (4 suppl 1):S161-S171. doi: 10.1074/mcp.O116.066456. PubMed PMID:28179412 PubMed Central PMC5393396.

Shaulov, L, Gershberg, J, Deng, W, Finlay, BB, Sal-Man, N. The Ruler Protein EscP of the Enteropathogenic Escherichia coli Type III Secretion System Is Involved in Calcium Sensing and Secretion Hierarchy Regulation by Interacting with the Gatekeeper Protein SepL. MBio. 2017;8 (1):. doi: 10.1128/mBio.01733-16. PubMed PMID:28049143 PubMed Central PMC5210495.

Worrall, LJ, Hong, C, Vuckovic, M, Deng, W, Bergeron, JR, Majewski, DD et al.. Near-atomic-resolution cryo-EM analysis of the Salmonella T3S injectisome basal body. Nature. 2016; :. doi: 10.1038/nature20576. PubMed PMID:27974800 .

Stiemsma, LT, Arrieta, MC, Dimitriu, PA, Cheng, J, Thorson, L, Lefebvre, DL et al.. Shifts in Lachnospira and Clostridium sp. in the 3-month stool microbiome are associated with preschool age asthma. Clin. Sci. 2016;130 (23):2199-2207. doi: 10.1042/CS20160349. PubMed PMID:27634868 .

Tourret, J, Willing, BP, Dion, S, MacPherson, J, Denamur, E, Finlay, BB et al.. Immunosuppressive Treatment Alters Secretion of Ileal Antimicrobial Peptides and Gut Microbiota, and Favors Subsequent Colonization by Uropathogenic Escherichia coli. Transplantation. 2017;101 (1):74-82. doi: 10.1097/TP.0000000000001492. PubMed PMID:27681266 .

Labrière, C, Gong, H, Finlay, BB, Reiner, NE, Young, RN. Further investigation of inhibitors of MRSA pyruvate kinase: Towards the conception of novel antimicrobial agents. Eur J Med Chem. 2017;125 :1-13. doi: 10.1016/j.ejmech.2016.09.018. PubMed PMID:27643559.

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Wilhelm, RC, Cardenas, E, Leung, H, Szeitz, A, Jensen, LD, Mohn, WW et al.. Long-Term Enrichment of Stress-Tolerant Cellulolytic Soil Populations following Timber Harvesting Evidenced by Multi-Omic Stable Isotope Probing. Front Microbiol. 2017;8 :537. doi: 10.3389/fmicb.2017.00537. PubMed PMID:28443069 PubMed Central PMC5386986.

Pickles, BJ, Wilhelm, R, Asay, AK, Hahn, AS, Simard, SW, Mohn, WW et al.. Transfer of (13) C between paired Douglas-fir seedlings reveals plant kinship effects and uptake of exudates by ectomycorrhizas. New Phytol. 2017;214 (1):400-411. doi: 10.1111/nph.14325. PubMed PMID:27870059 .

Stiemsma, LT, Arrieta, MC, Dimitriu, PA, Cheng, J, Thorson, L, Lefebvre, DL et al.. Shifts in Lachnospira and Clostridium sp. in the 3-month stool microbiome are associated with preschool age asthma. Clin. Sci. 2016;130 (23):2199-2207. doi: 10.1042/CS20160349. PubMed PMID:27634868 .

Bergstrand, LH, Cardenas, E, Holert, J, Van Hamme, JD, Mohn, WW. Erratum for Bergstrand et al., Delineation of Steroid-Degrading Microorganisms through Comparative Genomic Analysis. MBio. 2016;7 (4):. doi: 10.1128/mBio.00865-16. PubMed PMID:27460794 PubMed Central PMC4981713.

Bergstrand, LH, Cardenas, E, Holert, J, Van Hamme, JD, Mohn, WW. Delineation of Steroid-Degrading Microorganisms through Comparative Genomic Analysis. MBio. 2016;7 (2):e00166. doi: 10.1128/mBio.00166-16. PubMed PMID:26956583 PubMed Central PMC4810484.

Deslippe, JR, Hartmann, M, Grayston, SJ, Simard, SW, Mohn, WW. Stable isotope probing implicates a species of Cortinarius in carbon transfer through ectomycorrhizal fungal mycelial networks in Arctic tundra. New Phytol. 2016;210 (2):383-90. doi: 10.1111/nph.13797. PubMed PMID:26681156 .

Arrieta, MC, Stiemsma, LT, Dimitriu, PA, Thorson, L, Russell, S, Yurist-Doutsch, S et al.. Early infancy microbial and metabolic alterations affect risk of childhood asthma. Sci Transl Med. 2015;7 (307):307ra152. doi: 10.1126/scitranslmed.aab2271. PubMed PMID:26424567 .

Leung, HT, Maas, KR, Wilhelm, RC, Mohn, WW. Long-term effects of timber harvesting on hemicellulolytic microbial populations in coniferous forest soils. ISME J. 2016;10 (2):363-75. doi: 10.1038/ismej.2015.118. PubMed PMID:26274049 PubMed Central PMC4737928.

Ramón-García, S, Stewart, GR, Hui, ZK, Mohn, WW, Thompson, CJ. The mycobacterial P55 efflux pump is required for optimal growth on cholesterol. Virulence. 2015;6 (5):444-8. doi: 10.1080/21505594.2015.1044195. PubMed PMID:26155739 PubMed Central PMC4601155.

Sze, MA, Dimitriu, PA, Suzuki, M, McDonough, JE, Campbell, JD, Brothers, JF et al.. Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease. Am. J. Respir. Crit. Care Med. 2015;192 (4):438-45. doi: 10.1164/rccm.201502-0223OC. PubMed PMID:25945594 PubMed Central PMC4595667.

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Warinner, C, Herbig, A, Mann, A, Fellows Yates, JA, Weiß, CL, Burbano, HA et al.. A Robust Framework for Microbial Archaeology. Annu Rev Genomics Hum Genet. 2017; :. doi: 10.1146/annurev-genom-091416-035526. PubMed PMID:28460196 .

Kumar Mondal, A, Kumar, J, Pandey, R, Gupta, S, Kumar, M, Bansal, G et al.. Comparative genomics of host-symbiont and free-living Oceanobacillus species. Genome Biol Evol. 2017; :. doi: 10.1093/gbe/evx076. PubMed PMID:28460092 .

Platz, EA. Reducing Cancer Burden in the Population: An Overview of Epidemiologic Evidence to Support Policies, Systems, and Environmental Changes. Epidemiol Rev. 2017; :1-10. doi: 10.1093/epirev/mxx009. PubMed PMID:28460082 .

Tress, B, Dorn, ES, Suchodolski, JS, Nisar, T, Ravindran, P, Weber, K et al.. Bacterial microbiome of the nose of healthy dogs and dogs with nasal disease. PLoS ONE. 2017;12 (5):e0176736. doi: 10.1371/journal.pone.0176736. PubMed PMID:28459886 .

Bendtsen, KM, Hansen, CHF, Krych, Ł, Skovgaard, K, Kot, W, Vogensen, FK et al.. Immunological effects of reduced mucosal integrity in the early life of BALB/c mice. PLoS ONE. 2017;12 (5):e0176662. doi: 10.1371/journal.pone.0176662. PubMed PMID:28459871 .

Moles, L, Gómez, M, Jiménez, E, Bustos, G, de Andrés, J, Melgar, A et al.. Bacterial Diversity of the Gastric Content of Preterm Infants during Their First Month of Life at the Hospital. Front Nutr. 2017;4 :12. doi: 10.3389/fnut.2017.00012. PubMed PMID:28459051 PubMed Central PMC5394887.

Bene, K, Varga, Z, Petrov, VO, Boyko, N, Rajnavolgyi, E. Gut Microbiota Species Can Provoke both Inflammatory and Tolerogenic Immune Responses in Human Dendritic Cells Mediated by Retinoic Acid Receptor Alpha Ligation. Front Immunol. 2017;8 :427. doi: 10.3389/fimmu.2017.00427. PubMed PMID:28458670 PubMed Central PMC5394128.

Meyer, JL, Paul, VJ, Raymundo, LJ, Teplitski, M. Comparative Metagenomics of the Polymicrobial Black Band Disease of Corals. Front Microbiol. 2017;8 :618. doi: 10.3389/fmicb.2017.00618. PubMed PMID:28458657 PubMed Central PMC5394123.

Stroman, DW, Mintun, K, Epstein, AB, Brimer, CM, Patel, CR, Branch, JD et al.. Reduction in bacterial load using hypochlorous acid hygiene solution on ocular skin. Clin Ophthalmol. 2017;11 :707-714. doi: 10.2147/OPTH.S132851. PubMed PMID:28458509 PubMed Central PMC5402722.

Wells, ML, Potin, P, Craigie, JS, Raven, JA, Merchant, SS, Helliwell, KE et al.. Algae as nutritional and functional food sources: revisiting our understanding. J. Appl. Phycol. 2017;29 (2):949-982. doi: 10.1007/s10811-016-0974-5. PubMed PMID:28458464 PubMed Central PMC5387034.

Zhu, X, Chen, B, Zhu, L, Xing, B. Effects and mechanisms of biochar-microbe interactions in soil improvement and pollution remediation: A review. Environ. Pollut. 2017;227 :98-115. doi: 10.1016/j.envpol.2017.04.032. PubMed PMID:28458251 .

Moeller, AH. The shrinking human gut microbiome. Curr. Opin. Microbiol. 2017;38 :30-35. doi: 10.1016/j.mib.2017.04.002. PubMed PMID:28458095 .

Curry, SR. Clostridium difficile. Clin. Lab. Med. 2017;37 (2):341-369. doi: 10.1016/j.cll.2017.01.007. PubMed PMID:28457354 .

Labus, JS, Hollister, EB, Jacobs, J, Kirbach, K, Oezguen, N, Gupta, A et al.. Differences in gut microbial composition correlate with regional brain volumes in irritable bowel syndrome. Microbiome. 2017;5 (1):49. doi: 10.1186/s40168-017-0260-z. PubMed PMID:28457228 .

Kwong, CG, Bacharier, LB. Microbes and the Role of Antibiotic Treatment for Wheezy Lower Respiratory Tract Illnesses in Preschool Children. Curr Allergy Asthma Rep. 2017;17 (5):34. doi: 10.1007/s11882-017-0701-6. PubMed PMID:28456910 .

Medina-Colorado, AA, Vincent, KL, Miller, AL, Maxwell, CA, Dawson, LN, Olive, T et al.. Vaginal ecosystem modeling of growth patterns of anaerobic bacteria in microaerophilic conditions. Anaerobe. 2017; :. doi: 10.1016/j.anaerobe.2017.04.014. PubMed PMID:28456518 .

Szilágyi, A, Boza, G, Scheuring, I. Analysis of stability to cheaters in models of antibiotic degrading microbial communities. J. Theor. Biol. 2017; :. doi: 10.1016/j.jtbi.2017.04.025. PubMed PMID:28456462 .

Datta, S, Chowdhury, S, Roy, HK. Metabolism, microbiome and colorectal cancer. Aging (Albany NY). 2017; :. doi: 10.18632/aging.101234. PubMed PMID:28455972 .

Zhao, J, Nian, L, Kwok, LY, Sun, T, Zhao, J. Reduction in fecal microbiota diversity and short-chain fatty acid producers in Methicillin-resistant Staphylococcus aureus infected individuals as revealed by PacBio single molecule, real-time sequencing technology. Eur. J. Clin. Microbiol. Infect. Dis. 2017; :. doi: 10.1007/s10096-017-2955-2. PubMed PMID:28455781 .

Grigoryan, S, Bazukyan, I, Trchounian, A. Aggregation and Adhesion Activity of Lactobacilli Isolated from Fermented Products In Vitro and In Vivo: a Potential Probiotic Strain. Probiotics Antimicrob Proteins. 2017; :. doi: 10.1007/s12602-017-9283-9. PubMed PMID:28455689 .

 

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